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Assembly gaps
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Bài viết nhằm mục tiêu giới thiệu mô hình thực nghiệm điều khiển robot SCARA (Selective Compliance Assembly Robot Arm) dựa trên động học với giá rẻ phục vụ cho nghiên cứu và giảng dạy. Robot SCARA nằm trong số robot được sử dụng rộng rãi nhất trong công nghiệp do có độ cứng vững và độ chính xác cao.
8p
vispacex
16-11-2023
10
5
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Pancreatic adenocarcinoma (PDAC) persists as a malignancy with high morbidity and mortality that can benefit from new means to characterize and detect these tumors, such as radiogenomics. In order to address this gap in the literature, constructed a transcriptomic-CT radiogenomic (RG) map for PDAC.
12p
vischultz
20-10-2023
2
1
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We present RaGOO, a reference-guided contig ordering and orienting tool that leverages the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies in minutes. After the pseudomolecules are constructed, RaGOO identifies structural variants, including those spanning sequencing gaps.
17p
vielonmusk
30-01-2022
5
0
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Continuous developments in DNA sequencing technologies aim at alleviating the technical challenges that limit the ability to assemble sequence data into full-length chromosomes. Conventional assembly programs and pipelines often encounter difficulties to close gaps in draft genome assemblies introduced by regions enriched in repeated elements.
22p
viarchimedes
26-01-2022
14
0
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Magnetic and optical bifunctional nanoparticles that combine easy separation, preconcentration, and efficient SERS capabilities have been fabricated with high sensitivity and reproducibility through a low-cost method. These gold nanoparticles attached on magnetic silica-coated cobalt nanospheres (Co@SiO2 /AuNPs) display the advantage of strong resonance absorption due to gaps at nanoscale between neighboring metal nanoparticles bringing large field enhancements, known as “hot spots”.
12p
tudichquannguyet
29-11-2021
10
1
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De novo heterozygous assembly is an ongoing challenge requiring improved assembly approaches. In this study, three strategies were used to develop de novo Vitis vinifera ‘Sultanina’ genome assemblies for comparison with the inbred V. vinifera (PN40024 12X.v2) reference genome and a published Sultanina ALLPATHS-LG assembly (AP). The strategies were: 1) a default PLATANUS assembly (PLAT_d) for direct comparison with AP assembly, 2) an iterative merging strategy using METASSEMBLER to combine PLAT_d and AP assemblies (MERGE) and 3) PLATANUS parameter modifications plus GapCloser (PLAT*_GC).
12p
vibeauty
23-10-2021
7
1
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Single-molecule, real-time sequencing (SMRT) developed by Pacific BioSciences produces longer reads than second-generation sequencing technologies such as Illumina. The increased read length enables PacBio sequencing to close gaps in genome assembly, reveal structural variations, and characterize the intra-species variations.
14p
visilicon2711
20-08-2021
14
1
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Drosophila subobscura has long been a central model in evolutionary genetics. Presently, its use is hindered by the lack of a reference genome. To bridge this gap, here we used PacBio long-read technology, together with the available wealth of genetic marker information, to assemble and annotate a high-quality nuclear and complete mitochondrial genome for the species.
21p
visilicon2711
20-08-2021
10
2
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Closing gaps in draft genomes is an important post processing step in genome assembly. It leads to more complete genomes, which benefits downstream genome analysis such as annotation and genotyping. Several tools have been developed for gap closing.
10p
visilicon2711
20-08-2021
9
1
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Based on an initial collecting of database sequences from the gap junction protein gene family (also called connexin genes) in a few teleosts, the naming of these sequences appeared variable. The reasons could be (i) that the structure in this family is variable across teleosts, or (ii) unfortunate naming.
19p
vijeeni2711
24-07-2021
9
0
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The olive fruit fly, Bactrocera oleae, is the most important pest in the olive fruit agribusiness industry. This is because female flies lay their eggs in the unripe fruits and upon hatching the larvae feed on the fruits thus destroying them.
21p
vijeeni2711
24-07-2021
15
0
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Glycosylphosphatidylinositol (GPI) addition is one of the several post-translational modifications to proteins that increase their affinity for membranes. In eukaryotes, the GPI transamidase complex (GPI-T) catalyzes the attachment of pre-assembled GPI anchors to GPI-anchored proteins (GAPs) through a transamidation reaction.
14p
vijichea2711
28-05-2021
4
1
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Decreasing costs of DNA sequencing have made prokaryotic draft genome sequences increasingly common. A contig scaffold is an ordering of contigs in the correct orientation. A scaffold can help genome comparisons and guide gap closure efforts.
12p
viwyoming2711
16-12-2020
6
1
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The current versions of reference genome assemblies still contain gaps represented by stretches of Ns. Since high throughput sequencing reads cannot be mapped to those gap regions, the regions are depleted of experimental data.
9p
vicoachella2711
27-10-2020
10
2
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Many organisms, in particular bacteria, contain repetitive DNA fragments called tandem repeats. These structures are restored by DNA assemblers by mapping paired-end tags to unitigs, estimating the distance between them and filling the gap with the specified DNA motif, which could be repeated many times.
10p
viconnecticut2711
28-10-2020
10
0
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The present invention provides a modular drilling assembly having a module for contactless power and data transfer over a nonconductive gap between rotating and non-rotating members of a steering module. The gap usually application data contains a non-conductive fluid, such as drilling fluid, or oil for operating hydraulic devices in the down-hole tool.
10p
tohitohi
19-05-2020
15
0
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Improving cultivability of a wider range of bacterial and archaeal community members, living natively in natural environments and within plants, is a prerequisite to better understanding plant-microbiota interactions and their functions in such very complex systems. Sequencing, assembling, and annotation of pure microbial strain genomes provide higher quality data compared to environmental metagenome analyses, and can substantially improve gene and protein database information.
13p
caygaocaolon1
13-11-2019
18
1
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The wire-wrapped fuel bundle is an assembly design in a sodium-cooled fast reactor. A wire spacer is used to maintain a constant gap between rods and to enhance the mixing of coolants. The wire makes the flow complicated by creating a sweeping flow and vortex flow. The vortex affects the flow field and heat transfer inside the subchannels.
11p
minhxaminhyeu3
12-06-2019
21
0
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This book is a unique reference, aimed at filling in the existing void and bridging a linguistic, as well as a cultural, gap between Americans and Russians in the legal sphere. It is the first English-Russian Dictionary of American Criminal Law to be published in this country. The demand for this kind of materials in the United States has been growing steadily over the past few years. Since the end of the Cold War thousands of Russians have come to the United States including political and religious refugees, immigrants, scientists, tourists, business people, and, regrettably, criminals.
350p
haiduong_1
27-02-2013
64
9
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As an emphasis of this point, consider the contrast between the studies of tax evasion and in- formality. Tax evasion studies primarily focus on incentives to evade and enforce. 1 By contrast, studies of informality, usually in developing countries, consider ine¢ ciencies in production, hu- man capital accumulation, and implications to industry composition. 2 A goal of this paper is to bridge some of this gap by studying the industry distribution of semiformal income.
51p
enterroi
01-02-2013
47
3
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