Automated annotation
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Annotated Logics are a category of non-classical logics that have recently appeared from a historical point of view. They are a type of paraconsistent, paracomplete and non-alethic logic. With the rapid development of AI and Automation and Robotics, more and more theory and techniques were coined to support the various issues that the themes were presenting
14p vimulcahy 18-09-2023 7 4 Download
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Scoring laboratory polysomnography (PSG) data remains a manual task of visually annotating 3 primary categories: sleep stages, sleep disordered breathing, and limb movements. Attempts to automate this process have been hampered by the complexity of PSG signals and physiological heterogeneity between patients.
8p visteverogers 24-06-2023 6 2 Download
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Part 2 of book "Multimedia information retrieval" provide with knowledge about: added services; visual search and relevance feedback; geo-temporal aspects of media; shot boundary detection for gradual transitions; multimedia information retrieval research; multimedia representation and management; metadata and automated annotation;...
73p britaikridanik 05-07-2022 18 4 Download
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Semi-automated genome annotation methods such as Segway take as input a set of genome-wide measurements such as of histone modification or DNA accessibility and output an annotation of genomic activity in the target cell type. Here we present annotations of 164 human cell types using 1615 data sets.
14p vielonmusk 30-01-2022 13 0 Download
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Functional genome annotation is the process of labelling functional genomic regions with descriptive information. Manual curation can produce higher quality genome annotations than fully automated methods. Manual annotation efforts are time-consuming and complex; however, software can help reduce these drawbacks.
14p vilarryellison 29-10-2021 11 0 Download
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The nematode Pristionchus pacificus is an established model organism for comparative studies with Caenorhabditis elegans. Over the past years, it developed into an independent animal model organism for elucidating the genetic basis of phenotypic plasticity.
12p vilichoo2711 23-06-2021 8 1 Download
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The dissertation aims to address these limitations by using annotation-based domain-specific language (aDSL), which is internal to OOPL, to not only express an essential and unified domain model but generatively construct modular software from this model.
193p justiceleague 09-06-2021 15 6 Download
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Yeasts are a model system for exploring eukaryotic genome evolution. Next-generation sequencing technologies are poised to vastly increase the number of yeast genome sequences, both from resequencing projects (population studies) and from de novo sequencing projects (new species).
12p viwyoming2711 16-12-2020 10 1 Download
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Single nucleotide polymorphisms (SNPs) are the most abundant genetic variant found in vertebrates and invertebrates. SNP discovery has become a highly automated, robust and relatively inexpensive process allowing the identification of many thousands of mutations for model and non-model organisms.
6p viwyoming2711 16-12-2020 14 0 Download
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Different genome annotation services have been developed in recent years and widely used. However, the functional annotation results from different services are often not the same and a scheme to obtain consensus functional annotations by integrating different results is in demand.
12p viwyoming2711 16-12-2020 16 1 Download
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Chromothripsis, a newly discovered type of complex genomic rearrangement, has been implicated in the evolution of several types of cancers. To date, it has been described in bone cancer, SHH-medulloblastoma and acute myeloid leukemia, amongst others, however there are still no formal or automated methods for detecting or annotating it in high throughput sequencing data.
13p vikentucky2711 26-11-2020 7 0 Download
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Protein sequence similarities to any types of non-globular segments (coiled coils, low complexity regions, transmembrane regions, long loops, etc. where either positional sequence conservation is the result of a very simple, physically induced pattern or rather integral sequence properties are critical) are pertinent sources for mistaken homologies.
29p vikentucky2711 26-11-2020 11 0 Download
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In quantitative proteomics, peptide mapping is a valuable approach to combine positional quantitative information with topographical and domain information of proteins. Quantitative proteomic analysis of cell surface shedding is an exemplary application area of this approach.
7p vikentucky2711 26-11-2020 14 1 Download
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Despite several recent advances in the automated generation of draft metabolic reconstructions, the manual curation of these networks to produce high quality genome-scale metabolic models remains a labour-intensive and challenging task.
6p vikentucky2711 26-11-2020 16 2 Download
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Technical advances in Next Generation Sequencing (NGS) provide a means to acquire deeper insights into cellular functions. The lack of standardized and automated methodologies poses a challenge for the analysis and interpretation of RNA sequencing data.
11p vioklahoma2711 19-11-2020 16 1 Download
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The amount of scientific information about MicroRNAs (miRNAs) is growing exponentially, making it difficult for researchers to interpret experimental results. In this study, we present an automated text mining approach using Latent Semantic Indexing (LSI) for prioritization, clustering and functional annotation of miRNAs.
12p vioklahoma2711 19-11-2020 7 1 Download
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Functional annotation of genes and gene products is a major challenge in the post-genomic era. Nowadays, gene function curation is largely based on manual assignment of Gene Ontology (GO) annotations to genes by using published literature.
13p vioklahoma2711 19-11-2020 9 1 Download
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Copy number variations (CNVs) are the main genetic structural variations in cancer genome. Detecting CNVs in genetic exome region is efficient and cost-effective in identifying cancer associated genes. Many tools had been developed accordingly and yet these tools lack of reliability because of high false negative rate, which is intrinsically caused by genome exonic bias.
6p viflorida2711 30-10-2020 11 2 Download
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The function of many noncoding RNAs (ncRNAs) depend upon their secondary structures. Over the last decades, several methodologies have been developed to predict such structures or to use them to functionally annotate RNAs into RNA families.
7p viconnecticut2711 28-10-2020 8 1 Download
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One of the main issues in the automated protein function prediction (AFP) problem is the integration of multiple networked data sources. The UNIPred algorithm was thereby proposed to efficiently integrate —in a function-specific fashion— the protein networks by taking into account the imbalance that characterizes protein annotations, and to subsequently predict novel hypotheses about unannotated proteins.
19p vijisoo2711 27-10-2020 14 1 Download