Rigorous software structuring

Lecture Making hard decisions with the decision tool suite (3e) - Chapter 1: Modeling decisions. After completing this section, you will understand the knowledge about decision analysis is a process that provides a structured method along with analytical tools designed to improve one’s decision-making skills; it enables you to base your decisions on more than intuition or hunches; it teaches you how to rigorously analyze decisions to gain helpful insights;...

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An incremental, loosely planned development approach is often used in bioinformatic studies when dealing with custom data analysis in a rapidly changing environment. Unfortunately, the lack of a rigorous software structuring can undermine the maintainability, communicability and replicability of the process.

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Applications that use HTML-based front ends benefit from the pervasive distribution of Web browsers for universal, cross-platform access. Another striking advantage of Web delivery lies in the concept of thin clients and centralized maintenance, facilitating instantaneous deployment of software updates at minimal cost. While the popularity of the Web and its advantages as a client-server platform have led to countless HTML-based applications, the development of Web applications is still mostly ad hoc.

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The handbook is written for mature readers with a great deal of rigorous experience with either doing scientific research or writing scientific software. However no specific background in computer science, statistics, or biology is required to understand most of the chapters. In order to accommodate the readers who wish to become professional computational biologists in the future we also provide appendices that contain educationally sound glossaries of terms and descriptions of major sequence analysis algorithms.

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