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Topological data analyses
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Chromosome conformation capture data, particularly from high-throughput approaches such as Hi-C, are typically very complex to analyse. Existing analysis tools are often single-purpose, or limited in compatibility to a small number of data formats, frequently making Hi-C analyses tedious and time-consuming.
19p
viarchimedes
26-01-2022
6
0
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The genome topology network (GTN) is a new approach for studying the phylogenetics of bacterial genomes by analysing their gene order. The previous GTN tool gives a phylogenetic tree and calculate the different degrees (DD) of various adjacent gene families with complete genome data, but it is limited to the gene family level.
14p
viansan2711
30-07-2021
8
1
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The micro-structure of liquid MgSiO3 is studied using molecular dynamics simulation (MD) with Born-Mayer potential. Models consisting of 5000 atoms are constructed at 3500 K over a large pressure range (0 - 25 GPa). The local structure as well as network topology of liquid MgSiO3 is clarified through analyses based on molecular dynamics simulation data
6p
tamynhan5
10-12-2020
12
2
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Biological/genetic data is a complex mix of various forms or topologies which makes it quite difficult to analyze. An abundance of such data in this modern era requires the development of sophisticated statistical methods to analyze it in a reasonable amount of time.
14p
vioklahoma2711
19-11-2020
10
1
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Oral immunotherapy (OIT) is a promising therapeutic approach to treat food allergic patients. However, concerns with regards to safety and long-term efficacy of OIT remain. There is a need to identify biomarkers that predict, monitor and/or evaluate the effects of OIT.
11p
vijisoo2711
27-10-2020
12
0
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