Enriching for direct regulatory targets in perturbed gene-expression profiles

Department of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA. †Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA. ‡Current address: DOE Joint Genome Institute, 2800 Mitchell Drive, Bldg 400, Walnut Creek, CA 94596, USA. Correspondence: Stephanie W Ruby. E-mail: sruby@unm.edu reviews Published: 30 March 2004 Genome Biology 2004, 5:R29 The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2004/5/4/R29 Received: 27 November 2003 Revised: 29 January 2004 Accepted: 12 February 2004...