Alignment quality

In order for Vietnam to enhance welfare gains from the integration, there has been analysis on impacts for Vietnam. Vietnamese government is expected to support firms with understanding about the EVFTA, market information on quality standards, labour and environmental requirements, building capacity to improve quality and value of exporting products including rice exports.

4p longtimenosee09 08-04-2024 3 1   Download

In this study we generated a whole exome sequencing benchmark dataset using the platinum genome sample NA12878 and developed an intersect-then-combine (ITC) approach to increase the accuracy in calling single nucleotide variants (SNVs) and indels in tumour-normal pairs. We evaluated the effect of alignment, base quality recalibration, mutation caller and filtering on sensitivity and false positive rate.

11p vioraclene 31-03-2024 4 2   Download

This specification covers two classes of fit-up and alignment quality straight-seam single- or double-welded austenitic steel pipe intended for high-temperature and general corrosive service.

8p hth_hn_vn 10-12-2023 10 4   Download

In this paper, we presented the process of building a good quality bilingual corpus for a low-resource language pair and proposed a novel method of sentence alignment that takes advantage of pre-trained modern models for rich-resource languages. In our experiments on aligning sentences and building a bilingual corpus for the Vietnamese-Laos language pair, we achieved higher precision and recall than other good sentence alignment methods and a good quality sentence-aligned Vietnamese-Laos bilingual corpus.

14p nhanchienthien 25-07-2023 6 5   Download

Inpatients could play an important role in identifying, preventing, and reporting problems in the quality and safety of their care. To support them effectively in that role, informatics solutions must align with their experiences. Thus, we set out to understand how inpatients experience undesirable events (UEs) and to surface opportunities for those informatics solutions.

10p vighostrider 25-05-2023 3 2   Download

To describe the design and impact of a systematic, enterprise-wide process for engaging US Department of Veterans Affairs (VA) leadership in prioritizing scarce implementation and evaluation resources.

11p vigamora 25-05-2023 6 2   Download

The vast quantities of short-read sequencing data being generated are often exchanged and stored as aligned reads. However, aligned data becomes outdated as new reference genomes and alignment methods become available.

6p vigalileogalilei 27-02-2022 9 1   Download

Read alignment is the first step in most sequencing data analyses. Because a read’s point of origin can be ambiguous, aligners report a mapping quality, which is the probability that the reported alignment is incorrect. Despite its importance, there is no established and general method for calculating mapping quality.

12p vialfrednobel 29-01-2022 12 0   Download

RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splicing, functional analysis, gene fusion detection and eQTL mapping.

19p viaristotle 29-01-2022 19 0   Download

MAESTRO provides functions for preprocessing, alignment, quality control, expression and chromatin accessibility quantification, clustering, differential analysis, and annotation. By modeling gene regulatory potential from chromatin accessibilities at the single-cell level, MAESTRO outperforms the existing methods for integrating the cell clusters between scRNAseq and scATAC-seq.

28p viarchimedes 26-01-2022 9 0   Download

Sheep is one of the ungulates and critical for animal husbandry development like on grassland, whereas there are few pieces of research about their heat responses to date. In the present study, we selected two sheep breeds consisting of Mongolian sheep with evolving cold resistibility and Dorper sheep specifically bred for heat tolerance to explore how the different breeds of sheep positively respond to heat conditions. Three Mongolian sheep and 3 Dorper sheep underwent 37 ℃ stress (2 h per day) during 4 weeks.

10p dolomite36 30-12-2021 8 0   Download

: RNA-Seq has become one of the most widely used applications based on next-generation sequencing technology. However, raw RNA-Seq data may have quality issues, which can significantly distort analytical results and lead to erroneous conclusions. Therefore, the raw data must be subjected to vigorous quality control (QC) procedures before downstream analysis. Currently, an accurate and complete QC of RNA-Seq data requires of a suite of different QC tools used consecutively, which is inefficient in terms of usability, running time, file usage, and interpretability of the results.

10p vibeauty 23-10-2021 11 0   Download

ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing) is a recently developed technique for genome-wide analysis of chromatin accessibility. Compared to earlier methods for assaying chromatin accessibility, ATAC-seq is faster and easier to perform, does not require cross-linking, has higher signal to noise ratio, and can be performed on small cell numbers.

13p vibeauty 23-10-2021 6 0   Download

The last 10 years have seen the rise of countless functional genomics studies based on NextGeneration Sequencing (NGS). In the vast majority of cases, whatever the species, whatever the experiment, the two first steps of data analysis consist of a quality control of the raw reads followed by a mapping of those reads to a reference genome/transcriptome.

11p visilicon2711 20-08-2021 6 1   Download

The time required to analyse RNA-seq data varies considerably, due to discrete steps for computational assembly, quantification of gene expression and splicing analysis. Recent fast non-alignment tools such as Kallisto and Salmon overcome these problems, but these tools require a high quality, comprehensive reference transcripts dataset (RTD), which are rarely available in plants.

17p viansan2711 30-07-2021 27 1   Download

Reference-guided read alignment and variant genotyping are prone to reference allele bias, particularly for samples that are greatly divergent from the reference genome. A Hereford-based assembly is the widely accepted bovine reference genome.

17p vilichoo2711 23-06-2021 8 1   Download

The whole chloroplast genomes of 3018 rice genotypes were assembled from available sequence data by alignment with a reference rice chloroplast genome sequence, providing high quality chloroplast genomes for analysis of diversity on a much larger scale than in any previous plant study.

9p vijichea2711 28-05-2021 4 1   Download

High tibial osteotomy is a common procedure to treat symptomatic osteoarthritis of the medial compartment of the knee with varus alignment. This is achieved by overcorrecting the varus alignment to 2-6° of valgus. Various high tibial osteotomy techniques are currently used to this end.

5p viannito2711 20-04-2021 10 2   Download

Pain and disability associated with degenerative lumbar spondylolisthesis (DLS) results in significant burden on both the patients’ quality of life and healthcare costs. Currently, there is controversy regarding the specificity of spinopelvic measures of sagittal plane alignment with respect to DLS. Moreover, the correlation among spinopelvic parameters of sagittal plane alignment remains to be clarified.

6p vitennessee2711 01-02-2021 8 1   Download

Objectives of the study: To find out about orientational CNTs and graphene material - the formation, methods of synthesis, properties and applications; optimization of technological conditions to produce high quality oriented CNT and graphene materials using the thermal CVD method.

28p capheviahe27 23-02-2021 13 3   Download