Correlation network analysis
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Ebook "Discovering biomolecular mechanisms with computational biology" present critical reviews of methods and high-impact applications in computational biology that lead to results that also non-bioinformaticians must know to design efficient experimental research plans. Discovering Biomolecular Mechanisms with Computational Biology also summarizes non-trivial theoretical predictions for regulatory and metabolic networks that have received experimental confirmation.
152p ladongphongthanh1008 22-04-2024 8 2 Download
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Ebook Physical logical security convergence: Powered by enterprise security management - Part 2 includes contents: Chapter 8 the new security model: the trusted enterprise; chapter 9 ESM architecture; chapter 10 log collection; chapter 11 real-time event correlation, analysis, and response; chapter 12 event storage and forensic analysis; chapter 13 bridging the chinese wall; chapter 14 physical and logical access; chapter 15 intelligent video analytics; chapter 16 environmental sensors; chapter 17 protecting critical infrastructure: process control and SCADA; chapter 18 final thoughts.
342p longtimenosee05 31-03-2024 0 0 Download
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Inter-tissue molecular interactions are critical to the function and behavior of biological systems in multicellular organisms, but systematic studies of interactions between tissues are lacking. Also, existing studies of inter-tissue interactions are based on direct gene expression correlations, which can’t distinguish correlations due to common genetic architectures versus biochemical or molecular signal exchange between tissues.
15p vioraclene 31-03-2024 8 2 Download
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This work is designed to focus on the glassy network analysis and visualizing the cluster and subnets formation, the rich set of bond-, edge- and face-sharing linkages. The correlation between the degree of polymerization and linkages forming is apparently indicated. The distribution of SiOx clusters is computed to determine the polymerization characteristic and Mg-rich region.
21p viberkshire 09-08-2023 5 3 Download
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This paper presents an application of Multilayer Feed-forward Neural Networks (MLFN) for Dynamic Stability Assessment (DSA) with feature reduction techniques. Dynamic stability of the power system is first determined based on the generator relative rotor angles obtained from time domain simulations.
7p vidoctorstrange 06-05-2023 4 3 Download
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The goal of this study is to identify the hub genes for Duchenne muscular dystrophy (DMD) and Becker muscular dystrophy (BMD) via weighted correlation network analysis (WGCNA). The gene expression profile of vastus lateralis biopsy samples obtained in 17 patients with DMD, 11 patients with BMD and 6 healthy individuals was downloaded from the Gene Expression Omnibus (GEO) database (GSE109178).
12p vihagrid 30-01-2023 7 3 Download
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Physical capacity and subjective wellbeing are important for healthy aging. Our aim was to study how objective/subjective physical capacity and subjective health relate to life satisfaction, in a 10-year follow-up of aging women.
9p vinobelprisen 26-03-2022 16 5 Download
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The expressions of Prunus dulcis C-repeat-binding factors (PdCBF1) and (PdCBF2) genes that are the major components in the cold responsive network of plants were studied in almonds. Real time PCR analysis of buds revealed the differential expression pattern of PpFT, PabSOC1, PdCBF1, PdCBF2 genes. The expressions of PpFT and PabSOC1 correlated with each other. Similarly, the expressions of PdCBF1 and PdCBF2 genes revealed a similar expression pattern in almonds. However, the expression of flowering genes were inversely correlated with the cold response genes in most of the almond accessions.
11p hanthienngao 30-11-2021 5 1 Download
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Pulmonary arterial hypertension (PH) secondary to pulmonary fbrosis (PF) is one of the most common complications in PF patients, it causes severe disease and usually have a poor prognosis. Whether the combination of PH and PF is a unique disease phenotype is unclear.
15p vimackenziebezos 29-11-2021 15 1 Download
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Finding meaningful gene-gene interaction and the main Transcription Factors (TFs) in co-expression networks is one of the most important challenges in gene expression data mining.
8p vitzuyu2711 29-09-2021 16 1 Download
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The leaves of tea plants (Camellia sinensis) are used to produce tea, which is one of the most popular beverages consumed worldwide. The nutritional value and health benefits of tea are mainly related to three abundant characteristic metabolites; catechins, theanine and caffeine. Weighted gene co-expression network analysis (WGCNA) is a powerful system for investigating correlations between genes, identifying modules among highly correlated genes, and relating modules to phenotypic traits based on gene expression profiling.
13p vitzuyu2711 29-09-2021 16 1 Download
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Positively correlated with carcass weight and animal growth, the ribeye area (REA) and the backfat thickness (BFT) are economic important carcass traits, which impact directly on producer’s payment.
13p vigiselle2711 30-08-2021 8 1 Download
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Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis
Alternative polyadenylation (APA) has emerged as a pervasive mechanism that contributes to the transcriptome complexity and dynamics of gene regulation. The current tsunami of whole genome poly(A) site data from various conditions generated by 3′ end sequencing provides a valuable data source for the study of APArelated gene expression.
15p vigiselle2711 30-08-2021 6 1 Download
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Oyster is rich in glycogen and free amino acids and is called “the milk of sea”. To understand the main genetic effects of these traits and the genetic networks underlying their correlation, we have conducted the whole genome resequencing with 427 oysters collected from the world-wide scale.
14p visilicon2711 20-08-2021 11 1 Download
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This research aims at diagnosing such priority areas for the development of petrochemicals in Russia as sustainable development and energy efficiency, at identifying trends and forecasting the development of the industry, taking into account the greening of the industry. Achieving the goal is based on the use of methods such as graphical, comparative, economic and mathematical (neural network modeling, correlation regression analysis), and prognostic.
10p mynguyenha 21-07-2021 12 2 Download
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Coexpression network analysis is a powerful tool to reveal transcriptional regulatory mechanisms, identify transcription factors, and discover gene functions. It can also be used to investigate changes in coexpression patterns in response to environmental insults or changes in experimental conditions.
12p vijeeni2711 30-06-2021 15 1 Download
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The differentiation of bone marrow mesenchymal stem cells is a complex and dynamic process. The gene expression pattern and mechanism of different periods of adipogenic and osteogenic differentiation remain unclear. Additionally, the interaction between these two lineage determination requires further exploration.
15p vilichoo2711 23-06-2021 9 1 Download
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Steroid-induced osteonecrosis of the femoral head (SONFH) is a chronic and crippling bone disease. This study aims to reveal novel diagnostic biomarkers of SONFH. Methods: The GSE123568 dataset based on peripheral blood samples from 10 healthy individuals and 30 SONFH patients was used for weighted gene co-expression network analysis (WGCNA) and differentially expressed genes (DEGs) screening.
12p vivermont2711 28-01-2021 9 2 Download
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In the past decade, the identification of gene co-expression has become a routine part of the analysis of high-dimensional microarray data. Gene co-expression, which is mostly detected via the Pearson correlation coefficient, has played an important role in the discovery of molecular pathways and networks.
17p vikentucky2711 24-11-2020 12 1 Download
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Methods for inference and comparison of biological networks are emerging as powerful tools for the identification of groups of tightly connected genes whose activity may be altered during disease progression or due to chemical perturbations.
15p vioklahoma2711 19-11-2020 5 1 Download