Corresponding runtimes

The maximal sensitivity for local alignments makes the Smith-Waterman algorithm a popular choice for protein sequence database search based on pairwise alignment. However, the algorithm is compute-intensive due to a quadratic time complexity. Corresponding runtimes are further compounded by the rapid growth of sequence databases.

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The JAXB compiler generates the interfaces and the implementation classes corresponding to the XML Schema. The JAXB Class Generator, which is based on the Java Specification Request (JSR) recommendation for JAXB, is to be used for new applications. The Class Generator for Java is deprecated and replaced by the JSR-31 implementation of XML Data Binding (JAXB). The runtime will be supported, so that the Java classes generated in older releases will continue to work.

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