Emerging imaging paradigms

ImageJ is an image analysis program extensively used in the biological sciences and beyond. Due to its ease of use, recordable macro language, and extensible plug-in architecture, ImageJ enjoys contributions from non-programmers, amateur programmers, and professional developers alike.

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This paper is intended as an overview of recent developments and trends. It wishes to pro- vide a short survey of the principal families of approaches, their use and limitations. Algo- rithms generic or specific to particular imaging modalities are not given here (see for exam- ple (10)). Section 2 presents the analysis pipeline, which accepts as input raw data and provides some form of processing or interpretation. Two basic processing paradigms are summarized in section 3, namely linear (or pseudo-linear) and morphological.

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