Memory alignment

Continued part 1, part 2 of ebook "PC assembly language" provides readers with contents including: chapter 5 - Arrays; chapter 6 - Floating point; chapter 7 - Structures and C++; non-floating point instructions;...

86p tieulangtran 28-09-2023 6 3   Download

Alignment-free methods, more time and memory efficient than alignment-based methods, have been widely used for comparing genome sequences or raw sequencing samples without assembly.

17p vielonmusk 30-01-2022 10 0   Download

Although Kraken’s k-mer-based approach provides a fast taxonomic classification of metagenomic sequence data, its large memory requirements can be limiting for some applications. Kraken 2 improves upon Kraken 1 by reducing memory usage by 85%, allowing greater amounts of reference genomic data to be used, while maintaining high accuracy and increasing speed fivefold.

13p vielonmusk 30-01-2022 9 0   Download

A seed location filter comes into play before alignment, discarding seed locations that alignment would deem a poor match. The ideal seed location filter would discard all poor match locations prior to alignment such that there is no wasted computation on unnecessary alignments.

18p vibeauty 23-10-2021 9 1   Download

Rapid evolutions in sequencing technology force read mappers into flexible adaptation to longer reads, changing error models, memory barriers and novel applications. Results: ALFALFA achieves a high performance in accurately mapping long single-end and paired-end reads to gigabase-scale reference genomes, while remaining competitive for mapping shorter reads.

11p vikentucky2711 24-11-2020 11 1   Download

In this paper we propose SparkBLAST, a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computational resources and Apache Spark as the coordination framework.

13p viflorida2711 30-10-2020 20 2   Download

This paper demonstrates a novel distributed architecture to facilitate the acquisition of Language Resources. We build a factory that automates the stages involved in the acquisition, production, updating and maintenance of these resources. The factory is designed as a platform where functionalities are deployed as web services, which can be combined in complex acquisition chains using workflows. We show a case study, which acquires a Translation Memory for a given pair of languages and a domain using web services for crawling, sentence alignment and conversion to TMX. ...

5p bunthai_1 06-05-2013 48 3   Download

Tuyển tập các báo cáo nghiên cứu về y học được đăng trên tạp chí y học Minireview cung cấp cho các bạn kiến thức về ngành y đề tài: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome...

0p thulanh21 12-11-2011 62 2   Download