Metagenomics revealing
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Populations of closely related microbial strains can be simultaneously present in bacterial communities such as the human gut microbiome. We recently developed a de novo genome assembly approach that uses read cloud sequencing to provide more complete microbial genome drafts, enabling precise differentiation and tracking of strain-level dynamics across metagenomic samples.
17p vibransone 28-03-2024 9 1 Download
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Part 1 book "Genomics and biotechnological advances in veterinary, poultry, and fisheries" includes content: Cattle genomics - Genome projects, current status, and future applications; metagenomics revealing new virus species in farm and pet animals and aquaculture; genome editing in animals - An overview; genetic markers for improving farm animals; applications of genome editing in farm animals; applications of genome editing in pet world; modulation of animal health through reverse genetics applications; animal models - Bridging cross-species variation through animal biotechnology.
219p oursky05 20-09-2023 7 3 Download
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Recent metagenomic analyses have revealed dysbiosis of the gut microbiota of ulcerative colitis (UC) patients. However, the impacts of this dysbiosis are not fully understood, particularly at the strain level.
18p vielonmusk 30-01-2022 9 0 Download
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The assessment and characterization of the gut microbiome has become a focus of research in the area of human autoimmune diseases. Ankylosing spondylitis is an inflammatory autoimmune disease and evidence showed that ankylosing spondylitis may be a microbiome-driven disease.
13p vialfrednobel 29-01-2022 10 1 Download
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Genomes computationally inferred from large metagenomic data sets are often incomplete and may be missing functionally important content and strain variation. We introduce an information retrieval system for large metagenomic data sets that exploits the sparsity of DNA assembly graphs to efficiently extract subgraphs surrounding an inferred genome.
16p viarchimedes 26-01-2022 6 0 Download
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Composting is an important technique for environment-friendly degradation of organic material, and is a microbe-driven process. Previous metagenomic studies of composting have presented a general description of the taxonomic and functional diversity of its microbial populations, but they have lacked more specific information on the key organisms that are active during the process.
19p vitzuyu2711 29-09-2021 4 2 Download
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Microbial communities recurrently establish metabolic associations resulting in increased fitness and ability to perform complex tasks, such as xenobiotic degradation. In a previous study, we have described a sulfonamidedegrading consortium consisting of a novel low-abundant actinobacterium, named strain GP, and Achromobacter denitrificans PR1.
23p viansan2711 30-07-2021 9 1 Download
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Recent advances in the next-generation sequencing (NGS) allowed the metagenomic analyses of DNA from many different environments and sources, including thousands of years old skeletal remains. It has been shown that most of the DNA extracted from ancient samples is microbial.
14p vijeeni2711 24-07-2021 13 0 Download
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The gut bacteria-derived metabolite trimethylamine-N-oxide (TMAO) has been discussed in various cardiometabolic diseases. However, evidence characterizing the microbial population responsible for TMAO accumulation in patients with atrial fibrillation (AF), an increasingly prevalent arrhythmia, is yet lacking.
9p vijeeni2711 30-06-2021 12 1 Download
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In the genomic age, genomes of microorganisms from various environments have been deciphered. Increasingly, it has become more and more difficult to find novel enzyme genes.
10p vilichoo2711 23-06-2021 6 1 Download
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Gut microbiome metagenomics has revealed many protein families and domains found largely or exclusively in that environment. Proteins containing the GxGYxYP domain are over-represented in the gut microbiota, and are found in Polysaccharide Utilization Loci in the gut symbiont Bacteroides thetaiotaomicron, suggesting their involvement in polysaccharide metabolism, but little else is known of the function of this domain.
12p vikentucky2711 26-11-2020 16 1 Download
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Metagenomic approaches have revealed the complexity of environmental microbiomes with the advancement in whole genome sequencing displaying a significant level of genetic heterogeneity on the species level.
11p viconnecticut2711 28-10-2020 13 1 Download
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High-throughput sequencing can establish the functional capacity of a microbial community by cataloging the protein-coding sequences (CDS) present in the metagenome of the community. The relative performance of diferent computational methods for identifying CDS from whole-genome shotgun sequencing is not fully established.
13p vicolorado2711 22-10-2020 7 0 Download
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A plant’s microbiota has various implications for the plant’s health and performance; however, the roles of many microbial lineages, particularly Archaea, have not been explored in detail. In the present study, analysis of archaea-specific 16S rRNA gene fragments and shotgun-sequenced metagenomes was combined with visualization techniques to obtain the first insights into the archaeome of a common salad plant, arugula (Eruca sativa Mill.).
10p caygaocaolon1 13-11-2019 10 0 Download
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Early mortality syndrome (EMS) or acute hepatopancreatic necrosis disease (AHPND) is an emerging disease reported recently that has caused massive loss to saline shrimp aquaculture. EMS/AHPND was recognized in Vietnam since 2011 and up to now its adverse effect is still serious to shrimp industry nationwide. Determination of the main pathogenic factor and the role of other microbial candidates is a very important study.
7p vidanh27 08-12-2018 17 1 Download
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Tuyển tập các báo cáo nghiên cứu về y học được đăng trên tạp chí y học Wertheim cung cấp cho các bạn kiến thức về ngành y đề tài: Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes...
0p thulanh21 15-11-2011 51 2 Download