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Network analysis workflow
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Cytoscape is one of the most successful network biology analysis and visualization tools, but because of its interactive nature, its role in creating reproducible, scalable, and novel workflows has been limited. We describe Cytoscape Automation (CA), which marries Cytoscape to highly productive workflow systems, for example, Python/R in Jupyter/RStudio.
15p
vielonmusk
30-01-2022
19
1
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Lecture UML based modeling and analysis: Detailing use cases scenarios and workflows present the content: main success scenario, other scenarios (successes or failures), user management, register user, organization of use case models, UML 2.0 activity diagrams, process order, data flow and control flow, dataflow networks, partitioning of activities,...
21p
bachkhinhdaluu
03-12-2021
18
0
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High-throughput transcriptomic datasets are often examined to discover new actors and regulators of a biological response. To this end, graphical interfaces have been developed and allow a broad range of users to conduct standard analyses from RNA-seq data, even with little programming experience.
15p
vilichoo2711
23-06-2021
10
1
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A growing number of crystal and NMR structures reveals a considerable structural polymorphism of DNA architecture going well beyond the usual image of a double helical molecule. DNA is highly variable with dinucleotide steps exhibiting a substantial flexibility in a sequence-dependent manner.
14p
viwyoming2711
16-12-2020
7
1
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A common class of biomedical analysis is to explore expression data from high throughput experiments for the purpose of uncovering functional relationships that can lead to a hypothesis about mechanisms of a disease. We call this analysis expression driven, −omics hypothesizing.
12p
vikentucky2711
26-11-2020
7
0
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Gene and protein interaction experiments provide unique opportunities to study the molecular wiring of a cell. Integrating high-throughput functional genomics data with this information can help identifying networks associated with complex diseases and phenotypes.
22p
vikentucky2711
24-11-2020
18
3
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Next-generation sequencing (NGS) approaches are commonly used to identify key regulatory networks that drive transcriptional programs. Although these technologies are frequently used in biological studies, NGS data analysis remains a challenging, time-consuming, and often irreproducible process.
16p
viflorida2711
30-10-2020
7
1
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The Pan-African bioinformatics network, H3ABioNet, comprises 27 research institutions in 17 African countries. H3ABioNet is part of the Human Health and Heredity in Africa program (H3Africa), an African-led research consortium funded by the US National Institutes of Health and the UK Wellcome Trust, aimed at using genomics to study and improve the health of Africans.
13p
vicoachella2711
27-10-2020
14
2
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