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Pair-wise interaction
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We investigate the assembly of a binary mixture of patchy colloids and droplets into crystal structures by use of the space-filling principle and Metropolis Monte Carlo simulations. Here, colloids with six patches in an octahedral symmetry attract droplets, whereas the colloid-colloid and droplet-droplet pairwise interactions are purely hard-core repulsions.
15p
viberkshire
09-08-2023
9
3
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Chromatin interactions are important for gene regulation and cellular specialization. Emerging evidence suggests many-body spatial interactions play important roles in condensing super-enhancer regions into a cohesive transcriptional apparatus. Chromosome conformation studies using Hi-C are limited to pairwise, population-averaged interactions; therefore unsuitable for direct assessment of many-body interactions.
17p
viarchimedes
26-01-2022
13
0
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The identification of protein-protein interaction sites is a computationally challenging task and important for understanding the biology of protein complexes. There is a rich literature in this field. A broad class of approaches assign to each candidate residue a real-valued score that measures how likely it is that the residue belongs to the interface.
14p
vikentucky2711
26-11-2020
9
1
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To facilitate advances in personalized medicine, it is important to detect predictive, stable and interpretable biomarkers related with different clinical characteristics. These clinical characteristics may be heterogeneous with respect to underlying interactions between genes.
18p
vioklahoma2711
19-11-2020
11
1
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Biological data such as microarrays contain a huge number of features. Thus, it is necessary to select a small number of novel features to characterize the entire dataset. All combinations of the features subset must be evaluated to produce an ideal feature subset, but this is impossible using currently available computing power.
13p
vioklahoma2711
19-11-2020
9
2
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Investigating and understanding drug-drug interactions (DDIs) is important in improving the effectiveness of clinical care. DDIs can occur when two or more drugs are administered together. Experimentally based DDI detection methods require a large cost and time.
15p
vioklahoma2711
19-11-2020
9
0
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In this paper, we develop a computational method for the metabolic network reconstruction that can uncover not only pairwise interactions but also interactions involving more than two substrates/products such as triple interactions, quartic interactions, etc.
13p
nguynthithuylinh
02-06-2017
18
2
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The Factory scene in the figure shows the efficacy of the pairwise constraint. By modifying the weights of the pairwise distance and orientation terms, different groupings of work desks and chairs are obtained. The accessibility and visibility constraints acting together prevent the door and poster from being blocked. The Flower Shop provides a striking example of the effect of the pathways constraint, which maintains a clear path between the doors despite the dense coverage of the remainder of the room by flowers.
9p
connhobinh
10-12-2012
51
4
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