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Previously annotated sequences
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Transposable elements (TEs) are mobile DNA sequences known as drivers of genome evolution. Their impacts have been widely studied in animals, plants and insects, but little is known about them in microalgae. In a previous study, we compared the genetic polymorphisms between strains of the haptophyte microalga Tisochrysis lutea and suggested the involvement of active autonomous TEs in their genome evolution.
14p
vibeauty
23-10-2021
12
1
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SnoReport uses RNA secondary structure prediction combined with machine learning as the basis to identify the two main classes of small nucleolar RNAs, the box H/ACA snoRNAs and the box C/D snoRNAs.
14p
vioklahoma2711
19-11-2020
7
0
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Identification of differentially methylated regions (DMRs) is the initial step towards the study of DNA methylation-mediated gene regulation. Previous approaches to call DMRs suffer from false prediction, use extreme resources, and/or require library installation and input conversion.
12p
viconnecticut2711
28-10-2020
9
1
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GenBank contains over 3 million viral sequences. The National Center for Biotechnology Information (NCBI) previously made available a tool for validating and annotating influenza virus sequences that is used to check submissions to GenBank.
23p
vicolorado2711
22-10-2020
6
1
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In this paper we deal with Named Entity Recognition (NER) on transcriptions of French broadcast data. Two aspects make the task more difficult with respect to previous NER tasks: i) named entities annotated used in this work have a tree structure, thus the task cannot be tackled as a sequence labelling task; ii) the data used are more noisy than data used for previous NER tasks. We approach the task in two steps, involving Conditional Random Fields and Probabilistic Context-Free Grammars, integrated in a single parsing algorithm. We analyse the effect of using several tree representations.
11p
bunthai_1
06-05-2013
66
3
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