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Sequencing analysis
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Part 1 of ebook "Data structures and algorithms in Python" provides readers with contents including: Chapter 1 - Python primer; Chapter 2 - Object-oriented programming; Chapter 3 - Algorithm analysis; Chapter 4 - Recursion; Chapter 5 - Array-based sequences; Chapter 6 - Stacks, queues, and deques; Chapter 7 - Linked lists; Chapter 8 - Trees;...
383p
daonhiennhien
03-07-2024
2
1
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Next-generation sequencing (NGS) is essential for lung cancer treatment. It is important to collect sufficient tissue specimens, but sometimes we cannot obtain large enough samples for NGS analysis.
10p
vishanshan
27-06-2024
1
1
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HBV infection is the leading risk factor for HCC. HBV infection has been confirmed to be associated with the exhaustion status of CD8+ T cells and immunotherapeutic efficacy in HCC. In this study, we aimed to investigate the prognostic value of the CD8+ T-cell exhaustion signature and immunotherapy response in patients with HBV-related HCC.
15p
vishanshan
27-06-2024
1
1
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To explore challenges of liquid-based cytology (LBC) specimens for next-generation sequencing (NGS) in lung adenocarcinoma and evaluate the efficacy of targeted therapy. Methods A retrospective analysis was conducted on the NGS test of 357 cases of advanced lung adenocarcinoma LBC specimens and compared with results of histological specimens to assess the consistency. The impact of tumor cellularity on NGS test results was evaluated.
8p
vikoch
27-06-2024
1
1
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Papillary thyroid carcinoma (PTC) is globally prevalent and associated with an increased risk of lymph node metastasis (LNM). The role of cancer-associated fibroblasts (CAFs) in PTC remains unclear
15p
vikoch
27-06-2024
2
1
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T-cell acute lymphoblastic leukemia (T-ALL) is a genetically heterogeneous disease with poor prognosis and inferior outcome. Although multiple studies have been perform on genomics of T-ALL, data from Indian sub-continent is scarce.
9p
vikoch
27-06-2024
2
1
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Increasing evidence indicates that gut microbiota are closely related to prostate cancer. This study aims to assess the gut microbiota composition in patients with prostate cancer compared to healthy participants, thereby advancing understanding of gut microbiota’s role in prostate cancer.
15p
vikoch
27-06-2024
3
1
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Esophageal cancer (EC) is a deadly disease with limited therapeutic options. Although circulating tumor DNA (ctDNA) could be a promising tool in this regard, the availiable evidence is limited. We performed a systematic review and meta-analysis to summarize the clinical applicability of the next-generation sequencing (NGS) and droplet digital polymerase chain reaction (ddPCR) technology on the ctDNA detection of the EC and listed the current challenges.
12p
vikoch
27-06-2024
1
1
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The Insecta are the most diverse group of animals on the planet. The diversity of Plecoptera aquatic insect order is used as an environmental and ecological indicator. The study of endemic species is important for confirming the national biodiversity and contributing to the determination of national sovereignty. Despite Vietnam being a biodiversity hotspot, the number of known insect species remains limited.
11p
viambani
18-06-2024
3
1
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Ebook Forensic microbiology focuses on newly emerging areas of microbiology relevant to medicolegal and criminal investigations: postmortem changes, establishing cause of death, estimating postmortem interval, and trace evidence analysis. Recent developments in sequencing technology allow researchers, and potentially practitioners, to examine microbial communities at unprecedented resolution and in multidisciplinary contexts.
416p
vimeyers
29-05-2024
2
2
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Part 2 book "Electromagnetic transients of power electronics systems" includes content: Measurement and observation of electromagnetic transients, electromagnetic pulses and sequences in main circuit, high performance closed loop control and its constraints, balance of electromagnetic energy in transients, applications of transient analysis in power converters.
225p
dianmotminh01
20-05-2024
4
1
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In this study, we utilize the genome-wide singlenucleotide polymorphisms (SNPs) data obtained through Multiplexed Inter Simple Sequence Repeat Genotyping by sequencing (MIG-seq) to explore the phylogenetic relationships among Quercus species in Vietnam. The results of this study reveal that all Quercus species in Vietnam belong to subgenus Cerris and the phylogenetic analysis strongly supports the recognition of two infrageneric sections: Quercus and Ilex section for the Vietnamese Quercus.
10p
dianmotminh02
03-05-2024
2
1
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In conclusion, sequence analysis may be useful for the rapid detection of STR resistance in MDR M. tuberculosis strains, which in turn could contribute to better control strategies of TB in Vietnam. Other molecular mechanisms associated with STR resistance in STR-resistant strains without mutations in the rpsL and rrs genes need to be further investigated.
11p
dianmotminh02
03-05-2024
4
1
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In this study, numerous Grateloupia spp. collected from coastal Vietnam and voucher specimens were used for morphological observation and phylogenetic analyses. Both analyses for samples collected at Nha Trang reveal a new record of G. yangjiangensis. The phylogenetic trees indicated that the herbarium vouchers labeled ‘G filicina’ and ‘G. livida’ from other locations of Vietnam group to G. yinggehaiensis clade. In addition, the phylogenetic trees also showed that the unknown Grateloupia sp. recently collected from Cat Ba Island is Phyllymenia taiwanensis. Therefore, a new record, G.
12p
dianmotminh02
03-05-2024
6
1
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Reconstructing phylogenetic trees from protein sequences normally requires empirical amino acid substitution models to calculate the likelihood of trees or genetic distances between species. The tree of life is classified into three domains of Eukaryotes, Archaea, and Bacteria. The amino acid substitution models have been intensively studied for decades, but few are related to Bacteria. Rooting bacterial trees remains a challenging problem in the phylogenetic analysis due to the long branch separating Bacteria and other domains.
14p
dianmotminh02
03-05-2024
4
2
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Cathelicidins include antimicrobial peptides (AMPs) and are involved in the innate immune defense against infections in mammals. Polymorphisms in the DNA sequence of cathelicidin genes could be relevant to inherited variations of host innate immunity, adaptation, and pathogen resistance. This study aims to investigate the sequence polymorphism of cathelicidin genes including CATHL2 and CATHL4 from local indigenous yellow cattle breeds of Vietnam.
11p
dianmotminh02
03-05-2024
8
1
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Ebook "Discovering biomolecular mechanisms with computational biology" present critical reviews of methods and high-impact applications in computational biology that lead to results that also non-bioinformaticians must know to design efficient experimental research plans. Discovering Biomolecular Mechanisms with Computational Biology also summarizes non-trivial theoretical predictions for regulatory and metabolic networks that have received experimental confirmation.
152p
ladongphongthanh1008
22-04-2024
8
2
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Ebook "Introduction to computational biology: An evolutionary approach" Analysis of molecular sequence data is the main subject of this introduction to computational biology. There are two closely connected aspects to biological sequences: (i) their relative position in the space of all other sequences, and (ii) their movement through this sequence space in evolutionary time. Accordingly, the first part of the book deals with classical methods of sequence analysis: pairwise alignment, exact string matching, multiple alignment, and hidden Markov models.
329p
tracanhphuonghoa1007
22-04-2024
10
2
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Luận văn "Nghiên cứu phân tích phát sinh loài của một số loài vi khuẩn thuộc chi Bacillus bằng kỹ thuật Multilocus sequencing analysis (MLSA)" được hoàn thành với mục tiêu nhằm xây dựng phương pháp định danh các loài thuộc chi Bacillus bằng kỹ thuật Multilocus Sequencing Analysis (MLSA) nhằm phân loại đến loài các vi khuẩn thuộc chi Bacillus thuộc bộ sưu tập giống vi sinh vật HBCM.
93p
khanhchi2510
19-04-2024
17
3
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Part 1 book "Molecular diagnostics - Fundamentals, methods, and clinical applications" includes content: Nucleic acids and proteins; gene expression and epigenetics; nucleic acid extraction methods; resolution and detection of nucleic acids; analysis and characterization of nucleic acids and proteins; nucleic acid amplifi cation; chromosomal structure and chromosomal mutations, gene mutations; DNA sequencing.
280p
muasambanhan10
06-04-2024
2
0
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