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Sequencing errors
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"The investigation of hot-hand fallacy and gambler’s fallacy in foreign exchange markets" using high frequency foreign exchange market data adopted from the Electronic Brokerage Service (EBS) platform, we explore whether a sequence of continuous trades and reversal trades bring judgment errors associated with processing information from random sequences for institutional investors. We find that, in keeping with hot-hand fallacy, longer spans lead to greater expectations for a continuation.
11p
dathienlang1012
03-05-2024
0
0
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Mutation acquisition is a major mechanism of bacterial antibiotic resistance that remains insufficiently characterised. Here we present RM-seq, a new amplicon-based deep sequencing workflow based on a molecular barcoding technique adapted from Low Error Amplicon sequencing (LEA-seq).
15p
vibransone
28-03-2024
7
2
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Long-read sequencing (LRS) techniques have been very successful in identifying structural variants (SVs). However, the high error rate of LRS made the detection of small variants (substitutions and short indels
15p
vicwell
29-02-2024
1
1
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Cancer mutations accumulate through replication errors and DNA damage coupled with incomplete repair. Individual mutational processes often show nucleotide sequence and functional region preferences. As a result, some sequence contexts mutate at much higher rates than others, with additional variation found between functional regions.
19p
vicwell
29-02-2024
2
1
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This paper has proposed a method of designing Polar codes by determining a synthetic channels reliability index sequence based on the Polarization Weights (PW) method called the Improved Polarization Weights (IPW) method. The simulation results show that the error correction performance of the code designed according to IPW is better than the code structure selected for 5G NR and designed according to the original PW method.
16p
vigojek
02-02-2024
1
0
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Radiotherapy has been widely used to treat various cancers, but its efcacy depends on the individual involved. Traditional gene-based machine-learning models have been widely used to predict radiosensitivity.
15p
vileonardodavinci
23-12-2023
6
3
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The CHARGE (Cohorts for Heart and Aging Research in Genomic Epidemiology) Sequencing Project is a national, collaborative effort from 3 studies: Framingham Heart Study (FHS), Cardiovascular Health Study (CHS), and Atherosclerosis Risk in Communities (ARIC).
10p
vinarcissa
21-03-2023
7
1
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In this paper, we propose a novel method for video anomaly detection motivated by an existing architecture for sequence-to-sequence prediction and reconstruction using a spatio-temporal convolutional Long Short-Term Memory (convLSTM).
6p
vigeneralmotors
13-07-2022
688
7
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The paper "Role of the fabricator in labor productivity" describes the results of three case studies in which the subcontractor-fabricator relations had a significant negative effect on labor productivity of the subcontractor. Late vendor deliveries, fabrication or construction errors, and out-of-sequence deliveries plagued each of the three projects. On two projects, there were work stoppages because there were no materials.
8p
runordie3
27-06-2022
12
3
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Current genotyping approaches for single-nucleotide variations rely on short, accurate reads from second-generation sequencing devices. Presently, third-generation sequencing platforms are rapidly becoming more widespread, yet approaches for leveraging their long but error-prone reads for genotyping are lacking.
16p
vigalileogalilei
27-02-2022
9
1
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Quantification of DNA sequence tags from engineered constructs such as plasmids, transposons, or other transgenes underlies many functional genomics measurements. Typically, such measurements rely on PCR followed by next-generation sequencing. However, PCR amplification can introduce significant quantitative error.
17p
vigalileogalilei
27-02-2022
12
1
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Sequencing errors are key confounding factors for detecting low-frequency genetic variants that are important for cancer molecular diagnosis, treatment, and surveillance using deep next-generation sequencing (NGS). However, there is a lack of comprehensive understanding of errors introduced at various steps of a conventional NGS workflow, such as sample handling, library preparation, PCR enrichment, and sequencing. In this study, we use current NGS technology to systematically investigate these questions.
15p
vigalileogalilei
27-02-2022
14
2
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Tandemly repeated DNA is highly mutable and causes at least 31 diseases, but it is hard to detect pathogenic repeat expansions genome-wide. Here, we report robust detection of human repeat expansions from careful alignments of long but error-prone (PacBio and nanopore) reads to a reference genome.
17p
vigalileogalilei
27-02-2022
9
1
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Third-generation sequencing technologies have advanced the progress of the biological research by generating reads that are substantially longer than second-generation sequencing technologies. However, their notorious high error rate impedes straightforward data analysis and limits their application. A handful of error correction methods for these error-prone long reads have been developed to date.
17p
vigalileogalilei
27-02-2022
9
1
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Reconstructing genomic segments from metagenomics data is a highly complex task. In addition to general challenges, such as repeats and sequencing errors, metagenomic assembly needs to tolerate the uneven depth of coverage among organisms in a community and differences between nearly identical strains.
14p
vielonmusk
30-01-2022
13
0
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Although it is assumed that contamination in bacterial whole-genome sequencing causes errors, the influences of contamination on clustering analyses, such as single-nucleotide polymorphism discovery, phylogenetics, and multilocus sequencing typing, have not been quantified.
6p
vielonmusk
30-01-2022
45
0
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Targeted deep sequencing is increasingly used to detect low-allelic fraction variants; it is therefore essential that errors that constitute baseline noise and impose a practical limit on detection are characterized. In the present study, we systematically evaluate the extent to which errors are incurred during specific steps of the capture-based targeted sequencing process.
13p
vialfrednobel
29-01-2022
8
0
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Most gene prediction methods detect coding sequences from transcriptome assemblies in the absence of closely related reference genomes. Such methods are of limited application due to high transcript fragmentation and extensive assembly errors, which may lead to redundant or false coding sequence predictions.
12p
vialfrednobel
29-01-2022
13
0
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Transmission fidelity of CpG DNA methylation patterns is not foolproof, with error rates from less than 1 to well over 10 % per CpG site, dependent on preservation of the methylated or unmethylated state and the type of sequence. This suggests a fairly high chance of errors.
8p
viaristotle
29-01-2022
10
0
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Subclonal mutations reveal important features of the genetic architecture of tumors. However, accurate detection of mutations in genetically heterogeneous tumor cell populations using next-generation sequencing remains challenging.
11p
viaristotle
29-01-2022
10
0
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