Synteny analysis
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The cyclic nucleotide-gated ion channel (CNGC) family affects the uptake of cations, growth, pathogen defence, and thermotolerance in plants. However, the systematic identification, origin and function of this gene family has not been performed in Brassica oleracea, an important vegetable crop and genomic model organism.
18p vilarryellison 29-10-2021 5 0 Download
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Soybean, a major legume crop native to East Asia, presents a wealth of resources for utilization. The basic leucine zipper (bZIP) transcription factors play important roles in various biological processes including developmental regulation and responses to environmental stress stimuli. Currently, little information is available regarding the bZIP family in the legume crop soybean.
14p vibeauty 23-10-2021 13 0 Download
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Drosophila subobscura has long been a central model in evolutionary genetics. Presently, its use is hindered by the lack of a reference genome. To bridge this gap, here we used PacBio long-read technology, together with the available wealth of genetic marker information, to assemble and annotate a high-quality nuclear and complete mitochondrial genome for the species.
21p visilicon2711 20-08-2021 9 1 Download
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Improving yield and yield-related traits is the crucial goal in breeding programmes of cereals. MetaQTL (MQTL) analysis discovers the most stable QTLs regardless of populations genetic background and field trial conditions and effectively narrows down the confidence interval (CI) for identification of candidate genes (CG) and markers development.
24p vijeeni2711 24-07-2021 7 0 Download
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Aquaporins (AQPs), as members of the major intrinsic protein (MIP) superfamily, facilitated the permeation of water and other solutes and are involved in multiple biological processes. AQP family exists in almost all living organisms and is highly diversified in vertebrates in both classification and function due to genome wide duplication.
20p vijeeni2711 30-06-2021 9 1 Download
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The lateral organ boundaries domain (LBD) gene is a plant-specific transcription factor that plays a critical role in diverse biological processes. However, the evolution and functional divergence of the LBD gene family has not yet been characterized for the Chinese White Pear.
17p vijeeni2711 30-06-2021 13 1 Download
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Legume species are an important plant model because of their protein-rich physiology. The adaptability and productivity of legumes are limited by major biotic and abiotic stresses. Responses to these stresses directly involve plasma membrane receptor proteins known as receptor-like kinases and receptor-like proteins.
17p vilichoo2711 25-06-2021 13 1 Download
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Genomic duplications constitute major events in the evolution of species, allowing paralogous copies of genes to take on fine-tuned biological roles. Unambiguously identifying the orthology relationship between copies across multiple genomes can be resolved by synteny, i.e. the conserved order of genomic sequences.
13p vikentucky2711 26-11-2020 8 1 Download
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Keeping in view above considerations, the present study was framed for isolation, biochemical characterization and molecular identification of iron nanoparticles synthesizing bacteria by use of 16S rRNA technology to determine evolutionary rates of different bacterial isolates and close synteny between them by using various bioinformatics tools.
12p angicungduoc8 07-11-2020 26 3 Download
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Genome assemblies across all domains of life are being produced routinely. Initial analysis of a new genome usually includes annotation and comparative genomics. Synteny provides a framework in which conservation of homologous genes and gene order is identified between genomes of different species.
13p viconnecticut2711 28-10-2020 13 1 Download
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Calcium-dependent protein kinases (CDPKs) play vital roles in plant growth and development, biotic and abiotic stress responses, and hormone signaling. Little is known about the CDPK gene family in grapevine.
19p vihashirama2711 21-05-2020 19 1 Download
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The peptides of the neuropeptide Y (NPY) family exert their functions, including regulation of appetite and circadian rhythm, by binding to G-protein coupled receptors. Mammals have five subtypes, named Y1,Y2 , Y4,Y5 and Y6, and recently Y7 has been discovered in fish and amphibi-ans. In chicken we have previously characterized the first four subtypes and here we describe Y6 and Y7.
16p inspiron33 26-03-2013 32 3 Download